Comparative assessment of methods for computational inference of transcript isoform from RNA-seq data
Simulated/synthetic sequencing data
| Sample name | 1 million reads | 3 million reads | 10 million reads | 30 million reads | 100 million reads |
| Reads | Download | Download | Download | Download | Download |
| Genomic alignments | Download | Download | Download | Download | Download |
| Transcriptomic alignments | Download | Download | Download | Download | Download |
Experimental sequencing data
| Sample name | Human, replicate 1 | Human, replicate 2 | Mouse, replicate 1 | Mouse, replicate 2 |
| Reads RNA-Seq | Download | Download | Download | Download |
| Genomic alignments | Download | Download | Download | Download |
| Transcriptomic alignments | Download | Download | Download | Download |
| Reads A-seq-2 | Download | Download | Download | Download |
Source code & resources for study reproduction
| Source code & instructions | Download |
| Additional resources (required for some steps; see instructions) | Download |
| Unfiltered RPKM/TPM/PPM tables for all methods and references | Download |
| Homo_sapiens.GRCh37.74.cdna_ncrna.GC_compatible.fa | Download |
| Mus_musculus.GRCm38.74.cdna_ncrna.GC_compatible.fa | Download |
| gencode.v19.annotation.ENS_compatible.gtf | Download |
| gencode.vM2.annotation.ENS_compatible.gtf | Download |
| gencode.v19.annotation.ENS_compatible.trx_gene_lookup_table | Download |
| gencode.vM2.annotation.ENS_compatible.trx_gene_lookup_table | Download |